Mangul Lab publishes fifth paper presenting a novel method for profiling immunoglobulin (Ig) receptor repertoires from RNA-Seq

Mangul Lab at USC published a paper presenting ImReP – a novel computational tool that uses RNA-Seq data for rapid and accurate profiling of the immunoglobulin (Ig) repertoire. RNA-Seq data presents a unique opportunity to examine the adaptive immune system by profiling the both light and heavy chains that [...]

Mangul Lab releases fourth paper that recommends ways to enhance rigor and reproducibility in biomedical research

Mangul Lab at USC has published our fourth paper in GigaScience, which presents our group’s review of efforts to improve scientific rigor and reproducibility via open-source data and academic software. Recommendations to enhance rigor and reproducibility in biomedical research Computational methods have reshaped the landscape of modern [...]

By |2020-06-01T21:09:33+00:00June 1st, 2020|Categories: Commentary, Publications|Tags: , , |

Mangul Lab publishes third paper – an analysis of microbial reference databases

Today we celebrate the publication of our third peer-reviewed paper since Mangul Lab launched at USC! Consensus of fungal and bacterial genome representation across multiple reference databases. Cailtin Loeffler and Aaron Karlsberg, both alumnus of Serghei’s group at UCLA and currently scientific research staff with Mangul Lab [...]

Mangul Lab publishes second paper – a benchmarking study of error correction methods

Today we celebrate the publication of our second peer-reviewed paper since Mangul Lab launched at USC Keith Mitchell, alumnus of Serghei’s group at UCLA, is the first author of  “Benchmarking of computational error-correction methods for next-generation sequencing data,” which is now available online. Jaque (our postdoc), Lana (our project [...]

Mangul Lab publishes first paper, a novel tool for managing bioinformatics analyses

We are proud to announce that our lab has published our first peer-reviewed paper since we established at USC School of Pharmacy in Fall 2019! Jaque, our postdoctoral scholar, is the first author on this paper! Congratulations! Our paper, which presents a novel tool for managing bioinformatics analyses on [...]